HOWTOs translated from BioPerl HOWTOs:
- Beginners HOWTO
- An introduction to BioRuby, including reading and writing sequence files, running and parsing BLAST, retrieving from databases, and more.
- SeqIO HOWTO
- Sequence file I/O, with many script examples.
- SearchIO HOWTO
- Parsing reports from sequence comparison programs like BLAST and writing custom reports.
- Feature-Annotation HOWTO
- Reading and writing detailed data associated with sequences.
- SimpleWebAnalysis HOWTO
- Submitting sequence data to Web forms and retrieving results.
- Flat Databases HOWTO
- Indexing local sequence files for fast retrieval.
- Graphics HOWTO
- Creating beautiful graphics for sequence display and annotation.
- Build Pipelines for Phylogenetic analyses HOWTO
- A framework for phylogenetic analyses from gene set to gene family to alignment to phylogenetic inference.
- Using EUtilities HOWTO
- A guide on how to use Bio::DB::EUtilities (BioPerl) for retrieving complex data and building customized data pipelines.
- EUtilities Cookbook
- Simple script examples using Bio::DB::EUtilities.
- Getting Genomic Sequences HOWTO
- Some examples of how to retrieve genomic sequences using BioRuby.
The above HOWTOs are based on BioPerl HOWTOs. Therefore, copyright notice for BioPerl HOWTOs described below is also applied to the above HOWTOs.
Please note that unless otherwise stated these documents are copyright to a HOWTO author. Please contact them before reproducing or using these documents for anything other than your own personal use.